Port of seaborn.clustermap. Reorders rows/columns by hierarchical
clustering and draws dendrograms alongside the heatmap. Returns a patchwork
composition.
Usage
clustermap(
data,
method = "average",
metric = "euclidean",
z_score = NULL,
standard_scale = NULL,
row_cluster = TRUE,
col_cluster = TRUE,
cmap = NULL,
dendrogram_ratio = 0.2,
...
)Arguments
- data
A matrix or data frame.
- method
Linkage method (default
"average").- metric
Distance metric (default
"euclidean").- z_score
Normalize rows (
0) or columns (1) to z-scores.- standard_scale
Scale rows (
0) or columns (1) to[0, 1].- row_cluster, col_cluster
Whether to cluster rows / columns.
- cmap
Colormap (default
"rocket").- dendrogram_ratio
Fraction of the figure used by the dendrograms.
- ...
Passed to heatmap.